MLOC_71940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.02699730.07040920.0718637
LEAShoots from the seedlings (10 cm shoot stage)0.0416748000.0376043
INF1Young developing inflorescences (5mm)0.245740.2920390.1021860.199805
INF2Developing inflorescences (1-1.5 cm)0.0882836000.110671
ROORoots from the seedlings (10 cm shoot stage)0.3043560.1716880.5630030.25401
NODDeveloping tillers at six leaf stage, 3rd internode00.005139540.02871750.0428545
CAR5Developing grain, bracts removed (5 DPA)0.0834456000.115515
CAR15Developing grain, bracts removed (15 DPA)1.917452.133362.027985.19385



CDS Structure of MLOC_71940






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71940.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372983NoneNoneNoneNone
MLOC_71940.1CUST_13528_PI427708083AvailableAvailablecontig_60742 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39980.1 +3 0.0 521 297/369 (80%) 13110.m03689 protein expressed protein
TAIR PP10 AT1G02260.1 +3 1e-130 341 207/390 (53%) Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502