MLOC_71920 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.541373.034582.161242.66239
LEAShoots from the seedlings (10 cm shoot stage)3.297060.4941431.088331.27633
INF1Young developing inflorescences (5mm)3.774171.74572.52832.40345
INF2Developing inflorescences (1-1.5 cm)0.5033790.6035891.032560.809131
ROORoots from the seedlings (10 cm shoot stage)0.1002430.1679810.6754790.25497
NODDeveloping tillers at six leaf stage, 3rd internode000.005277210.0139806
CAR5Developing grain, bracts removed (5 DPA)0.02265850.086478400.0649125
CAR15Developing grain, bracts removed (15 DPA)5.634922.2063626.638126.275



CDS Structure of MLOC_71920






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71920.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377072NoneNoneNoneNone
MLOC_71920.1CUST_6101_PI427708080AvailableAvailablecontig_60721 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54190.1 +2 0.0 558 376/514 (73%) 13102.m06205 protein pectinesterase, putative, expressed
TAIR PP10 AT2G43050.1 +2 1e-111 350 220/437 (50%) | Symbols: ATPMEPCRD | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:17902508-17904174 FORWARD LENGTH=518