MLOC_71899 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.09023930.2370570.1949030.193219
LEAShoots from the seedlings (10 cm shoot stage)000.447140.33703
INF1Young developing inflorescences (5mm)0.05709080.2678140.06936370.130987
INF2Developing inflorescences (1-1.5 cm)0.0588105000.074043
ROORoots from the seedlings (10 cm shoot stage)0.848080.86512.907221.12685
NODDeveloping tillers at six leaf stage, 3rd internode0.4750430.03081390.05666610.0718384
CAR5Developing grain, bracts removed (5 DPA)0.5856430.13858300.39261
CAR15Developing grain, bracts removed (15 DPA)2.165221.869541.274824.77006



CDS Structure of MLOC_71899






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71899.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71899.1CUST_15724_PI427708080AvailableAvailablecontig_60692 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g09980.1 +2 2e-33 123 94/187 (50%) 13102.m01101 protein expressed protein
TAIR PP10 AT3G50800.1 +2 3e-14 68 39/94 (41%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 249 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18882444-18882902 REVERSE LENGTH=152