MLOC_71895 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains43.827127.827542.060539.5593
LEAShoots from the seedlings (10 cm shoot stage)81.2583112.719155.852106.8
INF1Young developing inflorescences (5mm)0.229970.084736500.150731
INF2Developing inflorescences (1-1.5 cm)0.1932380.01846430.02309450.0993518
ROORoots from the seedlings (10 cm shoot stage)250.783185.929135.99241.523
NODDeveloping tillers at six leaf stage, 3rd internode53.331179.569922.5885203.819
CAR5Developing grain, bracts removed (5 DPA)159.858148.54145.362180.442
CAR15Developing grain, bracts removed (15 DPA)7.693655.495310.120920.9675



CDS Structure of MLOC_71895






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71895.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368221NoneNoneNoneNone
MLOC_71895.4CUST_6097_PI427708080AvailableAvailablecontig_60679 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g37910.1 -2 0.0 589 311/450 (69%) 13101.m03865 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT4G32940.1 -2 0.0 548 280/423 (66%) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494