MLOC_71796 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08101360.1365660.09482430.134776
LEAShoots from the seedlings (10 cm shoot stage)2.371062.295514.982132.83078
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.23666500.731271
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.05152150.058588200.193082



CDS Structure of MLOC_71796






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71796.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355377NoneNoneNoneNone
MLOC_71796.1CUST_6087_PI427708080AvailableAvailablecontig_60510 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47450.1 -3 9e-49 159 79/102 (77%) 13107.m05050 protein flowering promoting factor-like 1, putative, expressed
TAIR PP10 AT5G10625.1 -3 3e-26 100 51/109 (47%) BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:3358934-3359272 FORWARD LENGTH=112