MLOC_71762 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains40.425846.847153.921449.3868
LEAShoots from the seedlings (10 cm shoot stage)73.747762.995157.411458.6801
INF1Young developing inflorescences (5mm)20.894223.888426.287620.2643
INF2Developing inflorescences (1-1.5 cm)34.816928.645336.480936.5898
ROORoots from the seedlings (10 cm shoot stage)67.803361.459259.974882.5814
NODDeveloping tillers at six leaf stage, 3rd internode54.099354.918565.782208.282
CAR5Developing grain, bracts removed (5 DPA)46.46142.611540.723143.5697
CAR15Developing grain, bracts removed (15 DPA)140.948130.926132.984318.189



CDS Structure of MLOC_71762






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71762.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366171NoneNoneNoneNone
MLOC_71762.1CUST_6081_PI427708080AvailableAvailablecontig_60437 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39150.1 +1 0.0 904 510/677 (75%) 13108.m04172 protein expressed protein
TAIR PP10 AT5G35690.1 +1 2e-168 505 315/673 (47%) CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13865027-13868117 REVERSE LENGTH=603