MLOC_71749 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.403550.7022230.8332491.63718
LEAShoots from the seedlings (10 cm shoot stage)1.7014717.301953.07319.6155
INF1Young developing inflorescences (5mm)0.04969010.02885900.0122727
INF2Developing inflorescences (1-1.5 cm)0.0129084000.0260718
ROORoots from the seedlings (10 cm shoot stage)32.27932.463827.561635.4924
NODDeveloping tillers at six leaf stage, 3rd internode0.2178460.268950.3188510.849262
CAR5Developing grain, bracts removed (5 DPA)0.0161107000.0191611
CAR15Developing grain, bracts removed (15 DPA)00.0803080.03771560.00816861



CDS Structure of MLOC_71749






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71749.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361597NoneNoneNoneNone
AK365330NoneNoneNoneNone
AK371565NoneNoneNoneNone
MLOC_71749.1CUST_6080_PI427708080AvailableAvailablecontig_60418 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51520.1 -3 4e-111 351 179/286 (63%) 13104.m05258 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT5G57540.1 -3 1e-88 288 138/280 (49%) | Symbols: XTH13, AtXTH13 | xyloglucan endotransglucosylase/hydrolase 13 | chr5:23302996-23304049 REVERSE LENGTH=284