MLOC_71715 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.33299.4388410.555512.2264
LEAShoots from the seedlings (10 cm shoot stage)11.79227.211598.343868.39457
INF1Young developing inflorescences (5mm)27.560329.671125.911427.2774
INF2Developing inflorescences (1-1.5 cm)27.788332.509930.164440.248
ROORoots from the seedlings (10 cm shoot stage)9.5766913.605312.220419.2278
NODDeveloping tillers at six leaf stage, 3rd internode7.492018.7196514.25534.4679
CAR5Developing grain, bracts removed (5 DPA)23.910223.699821.793527.8346
CAR15Developing grain, bracts removed (15 DPA)11.960210.471810.759830.5582



CDS Structure of MLOC_71715






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71715.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364620NoneNoneNoneNone
MLOC_71715.1CUST_6075_PI427708080AvailableAvailablecontig_60361 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g37140.1 +3 0.0 566 328/427 (77%) 13107.m03819 protein expressed protein
TAIR PP10 AT1G62310.1 +3 5e-28 121 80/248 (32%) transcription factor jumonji (jmjC) domain-containing protein | chr1:23036039-23039301 REVERSE LENGTH=883