MLOC_71601 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.78258.656668.258229.94614
LEAShoots from the seedlings (10 cm shoot stage)7.7373.704394.876444.71599
INF1Young developing inflorescences (5mm)18.081215.560113.850914.0797
INF2Developing inflorescences (1-1.5 cm)12.660513.578513.843315.3385
ROORoots from the seedlings (10 cm shoot stage)7.408039.7452410.72211.9075
NODDeveloping tillers at six leaf stage, 3rd internode0.1247280.2281471.091811.18993
CAR5Developing grain, bracts removed (5 DPA)14.397314.844615.645915.5766
CAR15Developing grain, bracts removed (15 DPA)4.73514.294562.615489.91926



CDS Structure of MLOC_71601






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71601.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360644NoneNoneNoneNone
MLOC_71601.1CUST_6065_PI427708080AvailableAvailablecontig_60149 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g12320.1 -3 0.0 731 395/520 (76%) 13107.m01270 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT2G47990.1 -3 8e-127 398 231/506 (46%) | Symbols: SWA1, EDA13, EDA19 | transducin family protein / WD-40 repeat family protein | chr2:19637010-19638602 REVERSE LENGTH=530