MLOC_71540 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.316617.229217.867616.9679
LEAShoots from the seedlings (10 cm shoot stage)13.11313.715615.350311.2975
INF1Young developing inflorescences (5mm)26.231428.562328.155221.8698
INF2Developing inflorescences (1-1.5 cm)22.762326.400324.577725.0342
ROORoots from the seedlings (10 cm shoot stage)17.153420.671915.822622.1143
NODDeveloping tillers at six leaf stage, 3rd internode6.757697.290438.9404523.8033
CAR5Developing grain, bracts removed (5 DPA)25.316524.702726.515222.6019
CAR15Developing grain, bracts removed (15 DPA)5.950016.715096.8367613.7599



CDS Structure of MLOC_71540






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71540.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371933NoneNoneNoneNone
MLOC_71540.1CUST_6051_PI427708080AvailableAvailablecontig_60029 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40540.1 +3 0.0 653 334/383 (87%) 13110.m03755 protein enoyl-CoA hydratase/isomerase family protein, putative, expressed
TAIR PP10 AT4G31810.1 +3 3e-166 484 236/382 (62%) ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387365-15390290 REVERSE LENGTH=409