MLOC_71477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5300540.5768180.3212350.544955
LEAShoots from the seedlings (10 cm shoot stage)0.0471870.05563090.05547690.0456704
INF1Young developing inflorescences (5mm)0.1665360.2749620.0884650.180195
INF2Developing inflorescences (1-1.5 cm)0.4427130.1965850.1546810.325698
ROORoots from the seedlings (10 cm shoot stage)0.8749480.87661.140291.13012
NODDeveloping tillers at six leaf stage, 3rd internode0.019433900.04209110.0430954
CAR5Developing grain, bracts removed (5 DPA)0.06254160.02965980.02962290.0424798
CAR15Developing grain, bracts removed (15 DPA)0.02072590.024257200.0791789



CDS Structure of MLOC_71477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71477.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71477.2CUST_15671_PI427708080AvailableAvailablecontig_59915 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42850.1 +2 2e-52 182 118/257 (46%) 13110.m04048 protein OsWRKY2 - Superfamily of TFs having WRKY and zinc finger domains, expressed
TAIR PP10 AT2G34830.1 +2 2e-50 179 85/100 (85%) | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding protein 35 | chr2:14693839-14696378 REVERSE LENGTH=427