MLOC_71446 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.323936.097375.644416.727
LEAShoots from the seedlings (10 cm shoot stage)3.101083.308954.255243.29667
INF1Young developing inflorescences (5mm)9.183157.148544.974486.42049
INF2Developing inflorescences (1-1.5 cm)5.521265.516514.921486.34952
ROORoots from the seedlings (10 cm shoot stage)2.667725.104894.546016.36894
NODDeveloping tillers at six leaf stage, 3rd internode0.06078090.04087070.1207460.213113
CAR5Developing grain, bracts removed (5 DPA)7.254278.116738.692678.58059
CAR15Developing grain, bracts removed (15 DPA)1.214641.784581.127023.50352



CDS Structure of MLOC_71446






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71446.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248256.1NoneNoneNoneNone
MLOC_71446.1CUST_6044_PI427708080AvailableAvailablecontig_59838 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g57630.3 -1 2e-165 483 238/387 (61%) 13101.m06117 protein pentatricopeptide containing protein, putative, expressed
TAIR PP10 AT1G55890.1 -1 2e-64 219 129/360 (36%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20901364-20902560 FORWARD LENGTH=398