MLOC_71436 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains181.757143.344169.025140.984
LEAShoots from the seedlings (10 cm shoot stage)1099.88614.775482.121575.742
INF1Young developing inflorescences (5mm)3.229571.759881.88641.85849
INF2Developing inflorescences (1-1.5 cm)3.218264.358716.167864.42363
ROORoots from the seedlings (10 cm shoot stage)23.9872110.97431.69684.6818
NODDeveloping tillers at six leaf stage, 3rd internode66.041698.032316.5736222.235
CAR5Developing grain, bracts removed (5 DPA)607.698761.295629.813564.896
CAR15Developing grain, bracts removed (15 DPA)16.38177.3134631.53336.1832



CDS Structure of MLOC_71436






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71436.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361740NoneNoneNoneNone
MLOC_71436.1CUST_6043_PI427708080AvailableAvailablecontig_59822 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g24070.1 -2 5e-28 108 57/92 (62%) 13111.m02293 protein LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G59310.1 -2 2e-22 92 47/89 (53%) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112