MLOC_71432 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)2.30064.064093.919563.46426
CAR15Developing grain, bracts removed (15 DPA)0.3158760.169370.09266230.506869



CDS Structure of MLOC_71432






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71432.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71432.1CUST_9587_PI427708083AvailableAvailablecontig_59818 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g22440.1 -1 1e-118 358 194/349 (56%) 13106.m02411 protein SAM dependent carboxyl methyltransferase, putative, expressed
TAIR PP10 AT5G04370.1 -1 1e-51 183 114/316 (36%) | Symbols: NAMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1232027-1233888 FORWARD LENGTH=396