MLOC_71414 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.076519.678119.692917.602
LEAShoots from the seedlings (10 cm shoot stage)16.539712.43619.7349510.0593
INF1Young developing inflorescences (5mm)43.650836.989243.276834.9427
INF2Developing inflorescences (1-1.5 cm)55.692533.642831.423644.723
ROORoots from the seedlings (10 cm shoot stage)8.4969911.751215.877812.6401
NODDeveloping tillers at six leaf stage, 3rd internode6.982972.666717.681889.59804
CAR5Developing grain, bracts removed (5 DPA)12.819112.984512.811412.5897
CAR15Developing grain, bracts removed (15 DPA)6.413866.2228.4670116.1508



CDS Structure of MLOC_71414






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71414.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71414.1CUST_13113_PI427708083AvailableAvailablecontig_59780 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13990.3 -2 3e-17 78 35/41 (85%) 13102.m01559 protein U2 small nuclear ribonucleoprotein A, putative, expressed
TAIR PP10 AT1G09760.1 -2 3e-17 79 36/41 (88%) | Symbols: U2A | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249