MLOC_71276 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.205365.573025.594067.0115
LEAShoots from the seedlings (10 cm shoot stage)3.842340.9280021.04531.72017
INF1Young developing inflorescences (5mm)17.783724.332724.516721.7601
INF2Developing inflorescences (1-1.5 cm)24.420325.641524.893332.7911
ROORoots from the seedlings (10 cm shoot stage)6.069586.410815.323949.14749
NODDeveloping tillers at six leaf stage, 3rd internode4.477626.6313.9878522.4887
CAR5Developing grain, bracts removed (5 DPA)7.703158.138737.358249.34176
CAR15Developing grain, bracts removed (15 DPA)1.131931.171041.046223.12741



CDS Structure of MLOC_71276






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71276.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373783NoneNoneNoneNone
MLOC_71276.1CUST_6022_PI427708080AvailableAvailablecontig_59487 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g29970.1 +1 2e-116 347 205/265 (77%) 13109.m02982 protein TMV-MP30 binding protein 2C, putative, expressed
TAIR PP10 AT5G08120.1 +1 1e-25 107 66/189 (35%) | Symbols: MPB2C | movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326