MLOC_71252 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8410080.9718060.5032380.790396
LEAShoots from the seedlings (10 cm shoot stage)1.870510.1528510.8075770.751189
INF1Young developing inflorescences (5mm)0.5874120.1729690.1804470.273781
INF2Developing inflorescences (1-1.5 cm)0.5044140.969241.237670.985594
ROORoots from the seedlings (10 cm shoot stage)0.3009420.6190170.573690.615079
NODDeveloping tillers at six leaf stage, 3rd internode00.0096578300.0699875
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_71252






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71252.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71252.1CUST_15638_PI427708080AvailableAvailablecontig_59424 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49920.1 +1 4e-163 480 262/411 (64%) 13102.m05669 protein 3-ketoacyl-CoA synthase, putative, expressed
TAIR PP10 AT1G68530.1 +1 2e-152 452 227/412 (55%) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497