MLOC_71244 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.439616.435016.745657.9536
LEAShoots from the seedlings (10 cm shoot stage)3.05690.4749071.341221.36369
INF1Young developing inflorescences (5mm)2.445891.925011.280421.85289
INF2Developing inflorescences (1-1.5 cm)1.980493.317193.372293.846
ROORoots from the seedlings (10 cm shoot stage)5.513843.76493.9955.10684
NODDeveloping tillers at six leaf stage, 3rd internode0.5155080.4508760.01747320.978445
CAR5Developing grain, bracts removed (5 DPA)0.6953760.7038640.6070130.789424
CAR15Developing grain, bracts removed (15 DPA)0.7471570.5845430.5617041.77653



CDS Structure of MLOC_71244






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71244.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376492NoneNoneNoneNone
MLOC_71244.3CUST_6016_PI427708080AvailableAvailablecontig_59410 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g07764.2 -3 0.0 645 331/460 (72%) 13105.m00852 protein carboxyl-terminal proteinase, putative, expressed
TAIR PP10 AT1G23340.2 -3 0.0 527 265/425 (62%) Protein of Unknown Function (DUF239) | chr1:8284158-8286528 REVERSE LENGTH=409