MLOC_71188 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains83.820867.575862.317464.6562
LEAShoots from the seedlings (10 cm shoot stage)49.02143.398749.698334.5929
INF1Young developing inflorescences (5mm)50.828248.266246.546140.3807
INF2Developing inflorescences (1-1.5 cm)41.162741.43946.642447.1683
ROORoots from the seedlings (10 cm shoot stage)112.78890.138191.836693.339
NODDeveloping tillers at six leaf stage, 3rd internode58.581837.280745.856984.5905
CAR5Developing grain, bracts removed (5 DPA)83.305193.146672.957281.6103
CAR15Developing grain, bracts removed (15 DPA)106.439115.959102.352263.448



CDS Structure of MLOC_71188






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71188.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358779NoneNoneNoneNone
MLOC_71188.1CUST_6008_PI427708080AvailableAvailablecontig_59314 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08180.1 +2 3e-30 110 69/69 (100%) 13102.m00943 protein protein transport protein SEC61 subunit gamma, putative, expressed
TAIR PP10 AT5G50460.1 +2 5e-28 103 63/68 (93%) secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69