MLOC_71157 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.302410.485110.372410.2751
LEAShoots from the seedlings (10 cm shoot stage)11.413115.576915.458412.631
INF1Young developing inflorescences (5mm)12.269811.529812.124310.5501
INF2Developing inflorescences (1-1.5 cm)11.671711.300712.895113.4946
ROORoots from the seedlings (10 cm shoot stage)13.690710.204310.158613.8263
NODDeveloping tillers at six leaf stage, 3rd internode10.098711.385617.688944.7568
CAR5Developing grain, bracts removed (5 DPA)11.236410.898910.448511.1094
CAR15Developing grain, bracts removed (15 DPA)5.208365.457284.8159612.5621



CDS Structure of MLOC_71157






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71157.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376489NoneNoneNoneNone
MLOC_71157.3CUST_6000_PI427708080AvailableAvailablecontig_59252 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45730.1 +3 0.0 663 422/707 (60%) 13103.m04916 protein DNA-binding protein-like, putative, expressed
TAIR PP10 AT5G47430.1 +3 3e-54 204 160/505 (32%) DWNN domain, a CCHC-type zinc finger | chr5:19235819-19240596 REVERSE LENGTH=892