MLOC_71155 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.964662.545953.07642.47246
LEAShoots from the seedlings (10 cm shoot stage)4.421165.092454.800193.44889
INF1Young developing inflorescences (5mm)5.266785.941786.376484.06588
INF2Developing inflorescences (1-1.5 cm)4.816475.033545.605474.65146
ROORoots from the seedlings (10 cm shoot stage)1.871151.929523.3291.98087
NODDeveloping tillers at six leaf stage, 3rd internode0.5228730.5434381.879522.06723
CAR5Developing grain, bracts removed (5 DPA)1.880132.451912.117631.68719
CAR15Developing grain, bracts removed (15 DPA)0.9973010.7721490.7169261.7006



CDS Structure of MLOC_71155






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71155.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355682NoneNoneNoneNone
MLOC_71155.1CUST_18411_PI427708080AvailableAvailablecontig_5925 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g24844.1 -1 4e-80 268 137/218 (63%) 13103.m02926 protein expressed protein
TAIR PP10 AT5G02710.1 -1 3e-45 165 76/171 (44%) unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:612628-613480 FORWARD LENGTH=176