- Predicted Gene MLOC_71155
MLOC_71155 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_71155_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.96466 | 2.54595 | 3.0764 | 2.47246 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.42116 | 5.09245 | 4.80019 | 3.44889 |
INF1 | Young developing inflorescences (5mm) | 5.26678 | 5.94178 | 6.37648 | 4.06588 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.81647 | 5.03354 | 5.60547 | 4.65146 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.87115 | 1.92952 | 3.329 | 1.98087 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.522873 | 0.543438 | 1.87952 | 2.06723 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.88013 | 2.45191 | 2.11763 | 1.68719 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.997301 | 0.772149 | 0.716926 | 1.7006 |
CDS Structure of MLOC_71155
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_71155.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g24844.1 |
-1 |
4e-80 |
268 |
137/218 (63%) |
13103.m02926 protein expressed protein |
TAIR PP10 |
AT5G02710.1 |
-1 |
3e-45 |
165 |
76/171 (44%) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:612628-613480 FORWARD LENGTH=176 |