MLOC_71100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.599246.683516.820386.29193
LEAShoots from the seedlings (10 cm shoot stage)7.55666.243617.035044.90467
INF1Young developing inflorescences (5mm)11.499312.454113.47978.68742
INF2Developing inflorescences (1-1.5 cm)11.073512.768813.677211.101
ROORoots from the seedlings (10 cm shoot stage)9.772888.032367.777627.70438
NODDeveloping tillers at six leaf stage, 3rd internode6.396868.0935316.305325.0428
CAR5Developing grain, bracts removed (5 DPA)11.59028.058359.529237.86863
CAR15Developing grain, bracts removed (15 DPA)6.630256.872836.768912.8605



CDS Structure of MLOC_71100






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71100.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71100.1CUST_9546_PI427708083AvailableAvailablecontig_59146 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43780.2 -1 3e-48 172 81/104 (78%) 13105.m10402 protein ESP1, putative, expressed
TAIR PP10 AT1G73840.1 -1 7e-17 82 51/108 (47%) | Symbols: ESP1 | hydroxyproline-rich glycoprotein family protein | chr1:27763937-27766328 REVERSE LENGTH=388