MLOC_71054 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4063170.4548430.426760.441704
LEAShoots from the seedlings (10 cm shoot stage)1.35890.5075510.6662350.779099
INF1Young developing inflorescences (5mm)2.278412.518663.409882.06662
INF2Developing inflorescences (1-1.5 cm)1.14561.107110.6260531.11265
ROORoots from the seedlings (10 cm shoot stage)0.1691550.5826390.3253590.63875
NODDeveloping tillers at six leaf stage, 3rd internode0.342640.7014681.547662.88278
CAR5Developing grain, bracts removed (5 DPA)0.7510620.8400340.626030.68239
CAR15Developing grain, bracts removed (15 DPA)0.3059350.209040.1520040.550422



CDS Structure of MLOC_71054






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71054.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71054.5CUST_9541_PI427708083AvailableAvailablecontig_59051 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62040.1 -2 8e-63 206 115/156 (74%) 13101.m06631 protein ruvB-like, putative, expressed
TAIR PP10 AT5G22330.1 -2 2e-53 181 94/157 (60%) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458