MLOC_71043 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8892931.562971.269851.33622
LEAShoots from the seedlings (10 cm shoot stage)0.7467480.1302280.2966530.359185
INF1Young developing inflorescences (5mm)2.921382.214552.293942.11775
INF2Developing inflorescences (1-1.5 cm)1.912741.794881.998312.04591
ROORoots from the seedlings (10 cm shoot stage)0.9149880.8301751.018161.07757
NODDeveloping tillers at six leaf stage, 3rd internode0.1031490.04824370.1844670.252134
CAR5Developing grain, bracts removed (5 DPA)1.280391.898062.104781.71343
CAR15Developing grain, bracts removed (15 DPA)0.4355840.3245630.4521770.906012



CDS Structure of MLOC_71043






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71043.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373868NoneNoneNoneNone
MLOC_71043.1CUST_5988_PI427708080AvailableAvailablecontig_5903 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49520.1 -1 0.0 1455 709/842 (84%) 13104.m05057 protein pentatricopeptide repeat protein PPR868-14, putative, expressed
TAIR PP10 AT2G22070.1 -1 7e-168 513 267/746 (36%) pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786