MLOC_71004 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.13771.101940.9380211.03142
LEAShoots from the seedlings (10 cm shoot stage)3.78851.772391.832171.97051
INF1Young developing inflorescences (5mm)0.1315470.02998190.06793810.0644675
INF2Developing inflorescences (1-1.5 cm)0.025569200.06386930.0508957
ROORoots from the seedlings (10 cm shoot stage)0.7529170.5179730.9317130.651758
NODDeveloping tillers at six leaf stage, 3rd internode8.957966.062587.9510717.2226
CAR5Developing grain, bracts removed (5 DPA)2.224482.749292.910182.46803
CAR15Developing grain, bracts removed (15 DPA)1.91991.200031.644373.76438



CDS Structure of MLOC_71004






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71004.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71004.2NoneAvailableAvailablecontig_58926 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50990.3 -2 1e-51 179 144/188 (77%) 13102.m05791 protein RING-H2 finger protein ATL1Q, putative, expressed
TAIR PP10 AT1G74410.1 -2 4e-21 94 51/124 (41%) RING/U-box superfamily protein | chr1:27965723-27967681 FORWARD LENGTH=223