MLOC_70957 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains103.2873.096469.73280.4972
LEAShoots from the seedlings (10 cm shoot stage)52.145621.651333.243329.3445
INF1Young developing inflorescences (5mm)81.074584.757791.241377.092
INF2Developing inflorescences (1-1.5 cm)82.121898.2898105.325109.011
ROORoots from the seedlings (10 cm shoot stage)105.74597.283585.7149109.351
NODDeveloping tillers at six leaf stage, 3rd internode98.5597107.84984.3902291.966
CAR5Developing grain, bracts removed (5 DPA)77.057387.582374.10882.8414
CAR15Developing grain, bracts removed (15 DPA)19.804920.248620.23550.3053



CDS Structure of MLOC_70957






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70957.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248674.1NoneNoneNoneNone
MLOC_70957.2CUST_5973_PI427708080AvailableAvailablecontig_58841 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35814.1 -1 1e-142 409 205/216 (95%) 13106.m03697 protein ras-related protein, putative, expressed
TAIR PP10 AT4G18800.1 -1 1e-125 364 183/215 (85%) | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d | RAB GTPase homolog A1D | chr4:10320156-10321339 REVERSE LENGTH=214