MLOC_70917 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains35.666241.896540.880140.3908
LEAShoots from the seedlings (10 cm shoot stage)40.804634.687930.07131.2573
INF1Young developing inflorescences (5mm)57.054863.525663.788950.1291
INF2Developing inflorescences (1-1.5 cm)66.290562.76567.403570.598
ROORoots from the seedlings (10 cm shoot stage)29.486638.610436.221346.6289
NODDeveloping tillers at six leaf stage, 3rd internode39.219647.570854.4611173.481
CAR5Developing grain, bracts removed (5 DPA)45.173945.549350.161145.2625
CAR15Developing grain, bracts removed (15 DPA)27.376924.551322.817956.1071



CDS Structure of MLOC_70917






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70917.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70917.3CUST_15603_PI427708080AvailableAvailablecontig_58778 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46890.2 +1 0.0 665 434/481 (90%) 13104.m04734 protein pre-mRNA-processing factor 31, putative, expressed
TAIR PP10 AT1G60170.1 +1 9e-180 524 361/484 (75%) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485