morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_70914

Gene IDMLOC_70914
Source Contig contig_58773

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_70914 FPKM values

FPKM by Treatment	FPKM by Replicate

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	13.2847	9.27472	12.0237	11.5931
LEA	Shoots from the seedlings (10 cm shoot stage)	11.3727	10.871	12.8268	10.2736
INF1	Young developing inflorescences (5mm)	12.3758	13.6248	18.0431	13.5812
INF2	Developing inflorescences (1-1.5 cm)	16.5021	12.3604	15.3683	16.9349
ROO	Roots from the seedlings (10 cm shoot stage)	19.1017	9.45104	10.4199	13.7534
NOD	Developing tillers at six leaf stage, 3rd internode	12.5431	20.7613	23.3335	78.2416
CAR5	Developing grain, bracts removed (5 DPA)	8.76004	8.68858	8.77555	9.49108
CAR15	Developing grain, bracts removed (15 DPA)	5.59171	5.87708	6.23463	14.9732

CDS Structure of MLOC_70914

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK366111

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK366111	CUST_21235_PI427708080	None	None	None
MLOC_10864.1	None	Available	None	contig_155995 (Mapped)
MLOC_25248.1	None	Available	None	contig_1680006 (Not mapped)
MLOC_2630.1	None	Available	None	contig_1234930 (Not mapped)
MLOC_28342.1	None	Available	None	contig_190993 (Not mapped)
MLOC_30676.1	None	Available	None	contig_2117877 (Not mapped)
MLOC_30856.1	None	Available	None	contig_2133488 (Not mapped)
MLOC_40829.1	None	Available	None	contig_256529 (Mapped)
MLOC_46423.1	None	Available	None	contig_29007 (Not mapped)
MLOC_49059.1	None	Available	None	contig_33468 (Not mapped)
MLOC_49267.1	None	Available	None	contig_338798 (Mapped)
MLOC_52892.1	None	Available	None	contig_378873 (Not mapped)
MLOC_54702.1	None	Available	None	contig_393235 (Mapped)
MLOC_70914.1	None	Available	Available	contig_58773 (Mapped)
MLOC_78399.1	None	Available	None	contig_800647 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-