MLOC_70817 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06748780.07057010.06867790.0703712
LEAShoots from the seedlings (10 cm shoot stage)24.408523.81153.839714.6038
INF1Young developing inflorescences (5mm)0.02245890.023186900.021621
INF2Developing inflorescences (1-1.5 cm)0.07230130.06560070.02726690.0639295
ROORoots from the seedlings (10 cm shoot stage)1.343890.3631490.6935280.65432
NODDeveloping tillers at six leaf stage, 3rd internode0.03633360.05221390.3927810.354496
CAR5Developing grain, bracts removed (5 DPA)14.481625.102626.442920.8396
CAR15Developing grain, bracts removed (15 DPA)8.087228.59937.6440818.5924



CDS Structure of MLOC_70817






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70817.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252703.1NoneNoneNoneNone
MLOC_70817.1CUST_5953_PI427708080AvailableAvailablecontig_5860 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g47970.1 -2 0.0 737 361/420 (86%) 13111.m23059 protein AAA-type ATPase family protein, putative, expressed
TAIR PP10 AT2G39730.3 -2 0.0 677 339/435 (78%) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441