MLOC_70787 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.491423.449118.542322.1448
LEAShoots from the seedlings (10 cm shoot stage)20.809716.983614.977215.8935
INF1Young developing inflorescences (5mm)42.727843.801242.459839.0128
INF2Developing inflorescences (1-1.5 cm)54.648656.247549.581263.3755
ROORoots from the seedlings (10 cm shoot stage)14.74223.080717.293428.5632
NODDeveloping tillers at six leaf stage, 3rd internode8.6239910.816212.532937.3866
CAR5Developing grain, bracts removed (5 DPA)44.226841.177840.281744.0216
CAR15Developing grain, bracts removed (15 DPA)20.123218.472416.488446.3121



CDS Structure of MLOC_70787






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70787.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357387NoneNoneNoneNone
MLOC_70787.2CUST_5951_PI427708080AvailableAvailablecontig_58545 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g05310.4 -3 0.0 2081 1193/1286 (93%) 13102.m00571 protein splicing factor 3B subunit 1, putative, expressed
TAIR PP10 AT5G64270.1 -3 0.0 1838 1041/1292 (81%) splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269