MLOC_70693 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains49.33857.497151.818468.3631
LEAShoots from the seedlings (10 cm shoot stage)37.522923.154918.90627.1936
INF1Young developing inflorescences (5mm)149.248136.769148.067141.749
INF2Developing inflorescences (1-1.5 cm)99.9084109.9595.303139.99
ROORoots from the seedlings (10 cm shoot stage)12.44929.007929.048446.7867
NODDeveloping tillers at six leaf stage, 3rd internode4.066453.4891710.582621.746
CAR5Developing grain, bracts removed (5 DPA)44.337146.97744.372257.1536
CAR15Developing grain, bracts removed (15 DPA)14.200412.963911.737135.9909



CDS Structure of MLOC_70693






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70693.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251599.1NoneNoneNoneNone
MLOC_70693.3CUST_18404_PI427708080AvailableAvailablecontig_58380 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g41930.1 -1 3e-79 262 242/473 (51%) 13112.m04389 protein SRP40, C-terminal domain containing protein, expressed
TAIR PP10 AT5G57120.1 -1 1e-23 103 75/167 (45%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330