- Predicted Gene MLOC_70693
MLOC_70693 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_70693_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 49.338 | 57.4971 | 51.8184 | 68.3631 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 37.5229 | 23.1549 | 18.906 | 27.1936 |
INF1 | Young developing inflorescences (5mm) | 149.248 | 136.769 | 148.067 | 141.749 |
INF2 | Developing inflorescences (1-1.5 cm) | 99.9084 | 109.95 | 95.303 | 139.99 |
ROO | Roots from the seedlings (10 cm shoot stage) | 12.449 | 29.0079 | 29.0484 | 46.7867 |
NOD | Developing tillers at six leaf stage, 3rd internode | 4.06645 | 3.48917 | 10.5826 | 21.746 |
CAR5 | Developing grain, bracts removed (5 DPA) | 44.3371 | 46.977 | 44.3722 | 57.1536 |
CAR15 | Developing grain, bracts removed (15 DPA) | 14.2004 | 12.9639 | 11.7371 | 35.9909 |
CDS Structure of MLOC_70693
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_70693.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g41930.1 |
-1 |
3e-79 |
262 |
242/473 (51%) |
13112.m04389 protein SRP40, C-terminal domain containing protein, expressed |
TAIR PP10 |
AT5G57120.1 |
-1 |
1e-23 |
103 |
75/167 (45%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330 |