MLOC_70666 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.773623.616920.751524.8045
LEAShoots from the seedlings (10 cm shoot stage)17.56511.950111.670413.2464
INF1Young developing inflorescences (5mm)47.178245.941541.509640.1185
INF2Developing inflorescences (1-1.5 cm)46.497838.053242.954549.6289
ROORoots from the seedlings (10 cm shoot stage)17.816425.418324.153434.7142
NODDeveloping tillers at six leaf stage, 3rd internode12.433316.002319.593368.2848
CAR5Developing grain, bracts removed (5 DPA)38.399437.043338.952341.0264
CAR15Developing grain, bracts removed (15 DPA)27.35426.22724.558963.1252



CDS Structure of MLOC_70666






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70666.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248769.1NoneNoneNoneNone
MLOC_70666.2CUST_5934_PI427708080AvailableAvailablecontig_58321 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28190.1 -3 3e-161 477 316/456 (69%) 13105.m02902 protein ranBP1 domain containing protein, expressed
TAIR PP10 AT1G52380.1 -3 2e-63 219 179/424 (42%) NUP50 (Nucleoporin 50 kDa) protein | chr1:19509979-19511301 FORWARD LENGTH=440