MLOC_70597 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.636118.561417.67820.8343
LEAShoots from the seedlings (10 cm shoot stage)13.191210.796214.867712.3101
INF1Young developing inflorescences (5mm)27.031825.627325.815123.6152
INF2Developing inflorescences (1-1.5 cm)22.557425.785325.659227.5773
ROORoots from the seedlings (10 cm shoot stage)26.20522.145122.111930.6196
NODDeveloping tillers at six leaf stage, 3rd internode2.140472.517044.6393810.3028
CAR5Developing grain, bracts removed (5 DPA)20.517720.807720.507120.501
CAR15Developing grain, bracts removed (15 DPA)9.71979.046917.5448821.5947



CDS Structure of MLOC_70597






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70597.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249115.1NoneNoneNoneNone
MLOC_70597.2CUST_5922_PI427708080AvailableAvailablecontig_58220 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g48090.1 +2 0.0 623 319/398 (80%) 13103.m05189 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT1G71840.1 +2 1e-135 403 202/391 (52%) transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407