MLOC_70581 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.261430.954928.369836.4769
LEAShoots from the seedlings (10 cm shoot stage)25.935628.651724.231626.3023
INF1Young developing inflorescences (5mm)35.050134.647332.804234.3313
INF2Developing inflorescences (1-1.5 cm)37.771835.436837.493647.4419
ROORoots from the seedlings (10 cm shoot stage)21.687831.155632.843747.6885
NODDeveloping tillers at six leaf stage, 3rd internode24.961522.50421.972189.6786
CAR5Developing grain, bracts removed (5 DPA)21.27923.19923.777527.4163
CAR15Developing grain, bracts removed (15 DPA)10.25719.8557310.266128.1335



CDS Structure of MLOC_70581






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70581.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249458.1NoneNoneNoneNone
MLOC_70581.2CUST_18401_PI427708080AvailableAvailablecontig_5815 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g28430.1 -3 1e-94 290 188/274 (69%) 13107.m02846 protein growth regulating factor protein, putative, expressed
TAIR PP10 AT2G06200.1 -3 2e-26 107 53/111 (48%) | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 | chr2:2426340-2427255 FORWARD LENGTH=244