MLOC_70558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.817523.067620.059121.5857
LEAShoots from the seedlings (10 cm shoot stage)8.841147.550255.928256.41559
INF1Young developing inflorescences (5mm)38.444852.437346.052940.1564
INF2Developing inflorescences (1-1.5 cm)57.689648.770946.165156.3303
ROORoots from the seedlings (10 cm shoot stage)8.4431214.582810.757216.2553
NODDeveloping tillers at six leaf stage, 3rd internode0.5758790.5924610.3026221.71909
CAR5Developing grain, bracts removed (5 DPA)9.524468.234898.443618.54218
CAR15Developing grain, bracts removed (15 DPA)17.912519.775816.999843.5775



CDS Structure of MLOC_70558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70558.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252492.1NoneNoneNoneNone
MLOC_70558.2CUST_18400_PI427708080AvailableAvailablecontig_5815 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10800.3 +1 0.0 940 511/611 (84%) 13103.m01213 protein BTBN4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
TAIR PP10 AT2G14820.1 +1 2e-170 520 316/597 (53%) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634