MLOC_70556 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.153928.718228.26725.8348
LEAShoots from the seedlings (10 cm shoot stage)23.931118.954217.243317.1264
INF1Young developing inflorescences (5mm)38.292944.33444.672532.1925
INF2Developing inflorescences (1-1.5 cm)46.854146.152945.603946.2242
ROORoots from the seedlings (10 cm shoot stage)15.730127.327223.038330.3435
NODDeveloping tillers at six leaf stage, 3rd internode23.414424.747817.263778.7308
CAR5Developing grain, bracts removed (5 DPA)33.307429.610934.759328.7703
CAR15Developing grain, bracts removed (15 DPA)17.580815.816815.477233.5739



CDS Structure of MLOC_70556






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70556.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358608NoneNoneNoneNone
MLOC_70556.2CUST_5916_PI427708080AvailableAvailablecontig_5816 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51180.1 +1 0.0 1256 636/680 (94%) 13102.m05818 protein cullin, putative, expressed
TAIR PP10 AT1G26830.1 +1 0.0 1066 536/680 (79%) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732