MLOC_70552 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.771515.994617.115917.0014
LEAShoots from the seedlings (10 cm shoot stage)11.03868.42825.832227.07987
INF1Young developing inflorescences (5mm)12.493312.171313.293610.2458
INF2Developing inflorescences (1-1.5 cm)14.774114.095412.878614.7906
ROORoots from the seedlings (10 cm shoot stage)16.713317.838316.077420.5803
NODDeveloping tillers at six leaf stage, 3rd internode10.57768.48775.0237524.3601
CAR5Developing grain, bracts removed (5 DPA)21.688324.2322.549421.4668
CAR15Developing grain, bracts removed (15 DPA)37.036739.664934.657482.9458



CDS Structure of MLOC_70552






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70552.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374790NoneNoneNoneNone
MLOC_70552.1CUST_18399_PI427708080AvailableAvailablecontig_5815 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32968.2 -2 3e-117 343 174/212 (82%) 13109.m03311 protein emp24/gp25L/p24 family protein, putative, expressed
TAIR PP10 AT3G07680.1 -2 1e-95 287 143/204 (70%) emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208