MLOC_70501 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.567743.864740.573940.7285
LEAShoots from the seedlings (10 cm shoot stage)132.102205.216137.895141.947
INF1Young developing inflorescences (5mm)56.757460.792954.997849.7918
INF2Developing inflorescences (1-1.5 cm)43.964848.67444.877750.1881
ROORoots from the seedlings (10 cm shoot stage)28.878238.151834.304846.7559
NODDeveloping tillers at six leaf stage, 3rd internode46.538144.076559.2169164.226
CAR5Developing grain, bracts removed (5 DPA)146.022146.853148.579140.682
CAR15Developing grain, bracts removed (15 DPA)158.28133.507138.198322.884



CDS Structure of MLOC_70501






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70501.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364330NoneNoneNoneNone
MLOC_70501.1CUST_5911_PI427708080AvailableAvailablecontig_58077 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g06560.1 +3 0.0 1042 492/552 (89%) 13106.m00677 protein starch synthase, putative, expressed
TAIR PP10 AT5G24300.2 +3 0.0 815 371/514 (72%) | Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652