MLOC_70481 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains126.41485.649886.6915103.944
LEAShoots from the seedlings (10 cm shoot stage)46.587448.461260.087343.8033
INF1Young developing inflorescences (5mm)46.707253.280453.809850.4614
INF2Developing inflorescences (1-1.5 cm)65.691860.442564.822478.9993
ROORoots from the seedlings (10 cm shoot stage)133.645107.393100.708133.813
NODDeveloping tillers at six leaf stage, 3rd internode58.245175.933461.653205.358
CAR5Developing grain, bracts removed (5 DPA)98.3112112.00498.9875117.985
CAR15Developing grain, bracts removed (15 DPA)56.666158.816549.8523152.593



CDS Structure of MLOC_70481






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70481.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253122.1NoneNoneNoneNone
MLOC_70481.2CUST_5908_PI427708080AvailableAvailablecontig_58048 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26910.1 -2 4e-78 241 138/169 (82%) 13111.m02578 protein SKP1-like protein 1B, putative, expressed
TAIR PP10 AT5G42190.1 -2 1e-70 221 122/167 (73%) | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | chr5:16854495-16855516 REVERSE LENGTH=171