MLOC_70474 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6183725.657717.758718.6405
LEAShoots from the seedlings (10 cm shoot stage)16.33910.723511.11510.3468
INF1Young developing inflorescences (5mm)55.946354.56549.352244.3371
INF2Developing inflorescences (1-1.5 cm)80.689958.976850.45870.0407
ROORoots from the seedlings (10 cm shoot stage)5.9587117.94111.772717.6829
NODDeveloping tillers at six leaf stage, 3rd internode1.820352.8189911.286413.1311
CAR5Developing grain, bracts removed (5 DPA)25.446724.478424.010224.1962
CAR15Developing grain, bracts removed (15 DPA)8.065439.663696.8477520.0559



CDS Structure of MLOC_70474






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70474.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70474.2CUST_15536_PI427708080AvailableAvailablecontig_58035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49230.1 -1 0.0 640 347/409 (85%) 13105.m05265 protein ribosomal RNA large subunit methyltransferase J, putative, expressed
TAIR PP10 AT4G25730.1 -1 4e-154 464 248/412 (60%) FtsJ-like methyltransferase family protein | chr4:13102906-13106718 REVERSE LENGTH=821