MLOC_70473 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.216622.58219.582226.7656
LEAShoots from the seedlings (10 cm shoot stage)17.736911.511512.735814.6899
INF1Young developing inflorescences (5mm)55.625555.733655.086658.1231
INF2Developing inflorescences (1-1.5 cm)76.547955.838257.008285.5958
ROORoots from the seedlings (10 cm shoot stage)7.1933120.114915.884932.4314
NODDeveloping tillers at six leaf stage, 3rd internode1.905144.3590612.052826.9629
CAR5Developing grain, bracts removed (5 DPA)29.895129.287528.124337.3966
CAR15Developing grain, bracts removed (15 DPA)10.459810.72958.7769929.486



CDS Structure of MLOC_70473






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70473.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248876.1NoneNoneNoneNone
MLOC_70473.2NoneAvailableAvailablecontig_58035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49230.1 -3 2e-145 442 267/342 (78%) 13105.m05265 protein ribosomal RNA large subunit methyltransferase J, putative, expressed
TAIR PP10 AT4G25730.1 -3 1e-73 252 171/347 (49%) FtsJ-like methyltransferase family protein | chr4:13102906-13106718 REVERSE LENGTH=821