MLOC_70472 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.0204812.963711.966313.2106
LEAShoots from the seedlings (10 cm shoot stage)20.570613.422513.249414.4863
INF1Young developing inflorescences (5mm)7.198694.544674.342754.82008
INF2Developing inflorescences (1-1.5 cm)3.366983.630943.157854.0385
ROORoots from the seedlings (10 cm shoot stage)0.179021.921222.251412.36687
NODDeveloping tillers at six leaf stage, 3rd internode2.378533.287193.9170912.0373
CAR5Developing grain, bracts removed (5 DPA)7.529198.573848.643518.83461
CAR15Developing grain, bracts removed (15 DPA)1.247531.449481.539323.56379



CDS Structure of MLOC_70472






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70472.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375418NoneNoneNoneNone
MLOC_70472.2CUST_5907_PI427708080AvailableAvailablecontig_58035 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49220.2 +3 3e-150 434 213/236 (90%) 13105.m05263 protein GTP-binding protein, putative, expressed
TAIR PP10 AT5G66470.1 +3 0.0 522 243/330 (74%) RNA binding;GTP binding | chr5:26541986-26544302 REVERSE LENGTH=427