MLOC_70429 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains54.789848.169652.858448.7847
LEAShoots from the seedlings (10 cm shoot stage)57.00458.182271.94848.4616
INF1Young developing inflorescences (5mm)33.300336.395234.628828.8528
INF2Developing inflorescences (1-1.5 cm)26.307131.339630.997631.4582
ROORoots from the seedlings (10 cm shoot stage)79.564276.293571.607880.9544
NODDeveloping tillers at six leaf stage, 3rd internode72.4164.564848.1617167.053
CAR5Developing grain, bracts removed (5 DPA)46.33649.648843.969643.8659
CAR15Developing grain, bracts removed (15 DPA)15.445815.732213.712435.3203



CDS Structure of MLOC_70429






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70429.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249465.1NoneNoneNoneNone
MLOC_70429.1CUST_5901_PI427708080AvailableAvailablecontig_57960 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g44050.1 +3 4e-137 413 202/206 (98%) 13105.m04647 protein ras-related protein, putative, expressed
TAIR PP10 AT3G18820.1 +3 1e-121 372 184/205 (90%) | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | RAB GTPase homolog G3F | chr3:6484266-6486005 FORWARD LENGTH=206