MLOC_70413 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)1.049342.527711.429951.3064
INF1Young developing inflorescences (5mm)33.783738.906937.602632.64
INF2Developing inflorescences (1-1.5 cm)71.987240.359335.007255.098
ROORoots from the seedlings (10 cm shoot stage)1.757692.056112.229022.26063
NODDeveloping tillers at six leaf stage, 3rd internode4.496293.060936.373389.02408
CAR5Developing grain, bracts removed (5 DPA)8.68657.717629.023048.33383
CAR15Developing grain, bracts removed (15 DPA)0.803620.7613670.8303212.04629



CDS Structure of MLOC_70413






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70413.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70413.1CUST_13087_PI427708083AvailableAvailablecontig_57933 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g41370.1 -2 2e-25 105 52/59 (88%) 13107.m04304 protein OsMADS18 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT5G60910.1 -2 4e-24 100 50/54 (93%) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242