MLOC_70318 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.3331.993862.797922.03158
LEAShoots from the seedlings (10 cm shoot stage)3.967323.094921.013042.12577
INF1Young developing inflorescences (5mm)2.47683.238293.458792.35158
INF2Developing inflorescences (1-1.5 cm)4.327424.617484.708814.54389
ROORoots from the seedlings (10 cm shoot stage)1.104692.610652.738452.45593
NODDeveloping tillers at six leaf stage, 3rd internode3.039513.514742.410029.11112
CAR5Developing grain, bracts removed (5 DPA)7.142656.935716.770146.05001
CAR15Developing grain, bracts removed (15 DPA)2.882372.506663.307216.13147



CDS Structure of MLOC_70318






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70318.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70318.1CUST_15518_PI427708080AvailableAvailablecontig_57762 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g23810.1 -3 5e-32 123 59/141 (42%) 13109.m02254 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT1G33710.1 -3 5e-15 74 48/127 (38%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr1:12219657-12220289 FORWARD LENGTH=210