MLOC_70242 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.767697.176446.086126.86498
LEAShoots from the seedlings (10 cm shoot stage)4.197680.9430560.8751951.53299
INF1Young developing inflorescences (5mm)35.134146.796244.246836.4165
INF2Developing inflorescences (1-1.5 cm)28.405235.705729.037834.2714
ROORoots from the seedlings (10 cm shoot stage)14.07698.6938610.48889.11767
NODDeveloping tillers at six leaf stage, 3rd internode0.5988640.8318991.190351.92123
CAR5Developing grain, bracts removed (5 DPA)6.619597.978246.091456.62893
CAR15Developing grain, bracts removed (15 DPA)2.413411.958252.159275.403



CDS Structure of MLOC_70242






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70242.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359007NoneNoneNoneNone
MLOC_70242.2CUST_5870_PI427708080AvailableAvailablecontig_57665 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g12750.1 -3 7e-149 430 238/270 (88%) 13102.m01395 protein tetraspanin family protein, putative, expressed
TAIR PP10 AT2G19580.1 -3 1e-82 259 142/269 (53%) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270