MLOC_70229 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.639226.394924.185120.646
LEAShoots from the seedlings (10 cm shoot stage)22.88217.757513.889413.8048
INF1Young developing inflorescences (5mm)47.530251.431352.08736.5549
INF2Developing inflorescences (1-1.5 cm)66.869771.270162.608564.0768
ROORoots from the seedlings (10 cm shoot stage)17.118223.121320.323421.8571
NODDeveloping tillers at six leaf stage, 3rd internode24.81623.175720.749764.8253
CAR5Developing grain, bracts removed (5 DPA)36.727131.548735.324428.1313
CAR15Developing grain, bracts removed (15 DPA)16.418516.932316.725933.4672



CDS Structure of MLOC_70229






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70229.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376352NoneNoneNoneNone
MLOC_70229.2CUST_18393_PI427708080AvailableAvailablecontig_138502 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38980.3 +3 0.0 669 335/382 (88%) 13110.m03554 protein expressed protein
TAIR PP10 AT2G30700.1 +3 2e-120 373 205/419 (49%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13082033-13084384 REVERSE LENGTH=480