MLOC_70205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1640220.178380.209722
LEAShoots from the seedlings (10 cm shoot stage)0.4222680.07527610.1991920.219692
INF1Young developing inflorescences (5mm)0.07584840.04032910.04721030.04806
INF2Developing inflorescences (1-1.5 cm)0.175020.1948980.1364120.202771
ROORoots from the seedlings (10 cm shoot stage)00.1871670.2620130.30907
NODDeveloping tillers at six leaf stage, 3rd internode00.09422470.06132180.433135
CAR5Developing grain, bracts removed (5 DPA)0.3384760.4255550.4442890.401537
CAR15Developing grain, bracts removed (15 DPA)0.1573240.2093830.2307830.462109



CDS Structure of MLOC_70205






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70205.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70205.1CUST_15507_PI427708080AvailableAvailablecontig_57583 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g06530.1 +1 8e-89 207 106/263 (40%) 13101.m00644 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT2G02650.1 +1 5e-12 67 42/152 (28%) Ribonuclease H-like superfamily protein | chr2:735411-736546 FORWARD LENGTH=365