MLOC_70204 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.63699.620239.7082610.3337
LEAShoots from the seedlings (10 cm shoot stage)8.522646.6687.218966.30286
INF1Young developing inflorescences (5mm)17.753120.082324.249316.2988
INF2Developing inflorescences (1-1.5 cm)28.929122.802328.041727.4592
ROORoots from the seedlings (10 cm shoot stage)7.593428.833028.0140910.0156
NODDeveloping tillers at six leaf stage, 3rd internode8.4267812.522717.801742.7362
CAR5Developing grain, bracts removed (5 DPA)12.773612.484914.55612.2948
CAR15Developing grain, bracts removed (15 DPA)5.702614.35256.2193711.6698



CDS Structure of MLOC_70204






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70204.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70204.1CUST_9426_PI427708083AvailableAvailablecontig_5758 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g22370.1 -1 7e-87 286 177/256 (69%) 13102.m02510 protein expressed protein
TAIR PP10 AT5G40740.1 -1 3e-23 103 100/255 (39%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741