MLOC_70178 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.372221.147119.321222.0744
LEAShoots from the seedlings (10 cm shoot stage)9.705293.713323.721154.8753
INF1Young developing inflorescences (5mm)5.23625.045864.670814.93025
INF2Developing inflorescences (1-1.5 cm)3.631933.937684.107554.80407
ROORoots from the seedlings (10 cm shoot stage)9.7704513.748214.294917.3937
NODDeveloping tillers at six leaf stage, 3rd internode8.243094.592972.7165411.3112
CAR5Developing grain, bracts removed (5 DPA)10.14310.66738.7659911.0104
CAR15Developing grain, bracts removed (15 DPA)1.805231.642471.07374.24447



CDS Structure of MLOC_70178






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_70178.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_70178.1CUST_13085_PI427708083AvailableAvailablecontig_57541 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51890.2 +3 3e-29 114 53/60 (88%) 13102.m05907 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT1G78260.2 +3 3e-21 92 41/58 (71%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:29447317-29449246 FORWARD LENGTH=271